NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LV_Brine_h2_0102DRAFT_1000310

Scaffold LV_Brine_h2_0102DRAFT_1000310


Overview

Basic Information
Taxon OID3300000405 Open in IMG/M
Scaffold IDLV_Brine_h2_0102DRAFT_1000310 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)18283
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F058557Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
LV_Brine_h2_0102DRAFT_100031017F000934GAGMSLTLILAASESIGINDQRFVGQIVTRNQRISTSEIITVVPFGFELRPNNYLLYSKNRALLSSIRIPDKSLEQYLNFGATNWVNYIAYQGGMSSAQITACQWQTSSANKTLVLGSLPTVASTTFIVKIGDFVQVGRYAYIATADVQRGAGTTVGIPVHRNLIETLISPVNAVIGQYGITQALGGQTFVGVTFCVVLREYPTYTLTPITNDSFISWNGVFRAFEVVLP*
LV_Brine_h2_0102DRAFT_100031018F002085GAGGMNIIEPVVNTNNIRIGDFVRVTTPSAVYRFATTPSALTIVEVDALPFDALGGLVKIGDVQRDIKSTANETSVTLVGIDTALLGWVLGLEVKGSLIEMWHGFFDTNGALITTGGSGGLYKFFTGYINSFQISEQYMEEIRETVGTITVSAASIQIILQNRTAGRFTNDNSWQFFAPGDTSMNRVNFIETINYFFGKDLDPSVYKT*
LV_Brine_h2_0102DRAFT_10003109F058557N/AMAIVKYENVNVNDLTFGVNAMGEYTTTTTLKFVGRPLVQDVKNTVAITERYRVYSDLIGLKFNYTPNLKLIFDNQNQYSITWRGNDWRIADCIEANDRMSVTLMCYRNDPATEV*
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