Scaffold LV_Brine_h2_0102DRAFT_1000047

Overview

Basic Information

• Taxon OID: 3300000405
• Scaffold ID: LV_Brine_h2_0102DRAFT_1000047
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 42377
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (18.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012129	Metagenome / Metatranscriptome	283	Y
F034246	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
LV_Brine_h2_0102DRAFT_100004753	F034246	AGAAG	MQGIVLQGPTDYYKEVADHYSKFDNVVWAIWDDEYQFQIDYIKSKGIEVILVKKPLYPGYLNVNLQVKSTFEGIKALEGKVDEILKVRSDTIISNLDHLLDSLKGRQLSFMATCKEGVRKDLEYHLIYHHTSHDYPSDNIIYGKIEDMLLMFDFQIDEMLPIPPEALIIWNYMENKNMEFKLNYQNLIDNDISFFTDICLDKEVGVYWLKMAVNLVDWYKDKTIYDW*
LV_Brine_h2_0102DRAFT_100004759	F012129	N/A	MEKDPLDLLKQSLNQLLQADTSIKRKNKKIFDQKKDLFINLVNQMEYAVTKSYTLKRDYSIDLFDYEENYYQIIDSLIHLAFGKEIYELLSFYIYERNNEDGSQNGLYMGEDGEEIPLKNAEDLWLTVIKIKPNIFDEKR*