Scaffold BB_Man_B_Liq_inBBDRAFT_1007586

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1007586
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1674
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002564	Metagenome / Metatranscriptome	547	Y
F067680	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_10075861	F067680	N/A	MAIQTVNGGCVHIEIDAEDGLTHATFVFKTPQNPEILGGFVTMLAQGIEVLVPITDPDDEEEDD
BB_Man_B_Liq_inBBDRAFT_10075862	F002564	N/A	MAVLISRGTNLVEHHQSTPLTALNDSFEVHADSSEFTFAAVVTGGANFTLAFEASYNGGGTYFQLDTSKTINSDGQYAYFYSGKPANRIRMRISAISSGTPSVVPIIAVAYHG*