Scaffold BB_Man_B_Liq_inBBDRAFT_1004927

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1004927
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2229
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F045677	Metagenome	152	N
F048238	Metagenome	148	Y
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_10049273	F045677	N/A	MKKVETLLPEELVESLSAEAKEKGIHRSELIRERLMQPPNHLGLTTNDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELFSPSDGD*
BB_Man_B_Liq_inBBDRAFT_10049274	F048238	N/A	MGTKNVHLHYCQIADEHCPLAITRFTTFDLDDKPLAVEQVTYESNMDYMERQVINALRCNVEVSILTSTPIHEFKRLHHIFNCDK*
BB_Man_B_Liq_inBBDRAFT_10049275	F006772	N/A	MERLNKAIQLATTADLQRAAMFLEGAREVRKGSRRQRTNARSAQATAWKKKVDDSITW*
BB_Man_B_Liq_inBBDRAFT_10049276	F056529	N/A	MATKHGNRVYIQVLLEPFRGELFMQEADAQGIKPSALIRQLVYNYLAENTDEQTYCDALVNDKQKWQDAVDARLEGRAKNRRSRVIQLQQDIDSSN*