Scaffold BB_Man_B_Liq_inBBDRAFT

Basic Information
Taxon OID	3300000401 Open in IMG/M
Scaffold ID	BB_Man_B_Liq_inBBDRAFT_1001754 Open in IMG/M
Source Dataset Name	Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000401 Open in IMG/M

Scaffold ID

BB_Man_B_Liq_inBBDRAFT_1001754 Open in IMG/M

Source Dataset Name

Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4247
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (63.16%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4247

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (63.16%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Bioluminescent Bay, La Paraguera, Puerto Rico
Coordinates	Lat. (^o)	17.966667	Long. (^o)	-67.0	Alt. (m)	Depth (m)	.39
Location on Map

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Source Dataset Sampling Location

Location Name

Bioluminescent Bay, La Paraguera, Puerto Rico

Coordinates

Lat. (^o)

17.966667

Long. (^o)

-67.0

Alt. (m)

Depth (m)

.39

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F017818	Metagenome / Metatranscriptome	238	Y
F037191	Metagenome / Metatranscriptome	168	Y
F037700	Metagenome / Metatranscriptome	167	Y
F065729	Metagenome / Metatranscriptome	127	N
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_100175412	F065729	GGAGG	MKKLEFRPVTITYVRTMMFTPTSETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPPVEVEWGDELEAL*
BB_Man_B_Liq_inBBDRAFT_100175413	F008943	GGAGG	MKLDPDWMFLTIPIFIIVAFGVLTYDAQQQRVLFQQTYNKNLECRQVLKDKSVSIANEICGDVPVIGDFVR*
BB_Man_B_Liq_inBBDRAFT_100175414	F037700	GGAG	MKKYRIKKETYNNTTRYFPQERFLFWWLNVFAFDVYFDGGYSTLEEAQKRLCEYCRGTMVEYLDFDPGRDCK*
BB_Man_B_Liq_inBBDRAFT_10017546	F037191	N/A	MTVAEMIQKLQQFPQDQEVQITDGFQYKFYKGNFEFQLFEDVDGSTFVDIGVGGYDYE*
BB_Man_B_Liq_inBBDRAFT_10017547	F017818	GGAGG	MNKNSYYDWIAENDTYPEHSHKWIVGLYSRHEGVDGLHRYFGTFETKRQAKTFASKYREKYTKPGFISNVRVFPLCKVL*
BB_Man_B_Liq_inBBDRAFT_10017548	F077968	AGG	MTDTCKKWTIWTSIHLFEYCVYSWRNHMWNHLDGYPNETRMRNLFWYYLNYGNKNTYYD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold BB_Man_B_Liq_inBBDRAFT_1001754

Overview

Ecosystem & Geography

Associated Families

Sequences