Scaffold BB_Man_B_Liq_inBBDRAFT_1000396

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1000396
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8686
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F022116	Metagenome / Metatranscriptome	216	Y
F025689	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_100039611	F010762	AGGAG	MNQTALEAAFKEWWEASYGRPPGTHAVMTHVAFAAHILDLLELTDDLQPD*
BB_Man_B_Liq_inBBDRAFT_100039616	F025689	N/A	MEAQFHGAANAAALRALHAQQDWSGLLEYALLLAEQEASQRSQIHWLVQEASAAPPAGVQQWHLDLAEELLRGRRR*
BB_Man_B_Liq_inBBDRAFT_10003969	F022116	N/A	MIHLLMTEPFLTTDQLAARWGMKPAAIKNQRARGIGPSYITLPRIGTPAGTPRVRYPLAHVLAFEEANHITPLNP*