Scaffold BB_Man_B_Liq_inBBDRAFT_1000186

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1000186
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11712
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019444	Metagenome	229	Y
F020114	Metagenome / Metatranscriptome	226	Y
F037191	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_100018616	F019444	GAGG	MIQKPWDALSEHDFIRAVTVKGCPFYQGLMNGRDLMELQFEKLVWRTQTLAGLDFDVCEVSAKDMIGWLTHKGLKPWLGYYTFSNNPANGGESYRLLWRVETDLNLTYDECAKALKELKKYSFNLADKHALNPTRMFQGTNSGFFHYDSIAPRLNLKELANV*
BB_Man_B_Liq_inBBDRAFT_100018624	F037191	GGAG	MTVSEWIEKLKEFPLDQEVRITDGFKYHFYGGDFDFQLFEDVDGSTFVDIGIGGFEEDEE
BB_Man_B_Liq_inBBDRAFT_100018628	F020114	GAGG	MTKPKHFKSISRAIDKHGVHHLDAIDEYGYHWYATMQQKEEPWPTYVQHWVLRTH*