Scaffold ConS_8084CDRAFT_1000814

Overview

Basic Information

• Taxon OID: 3300000397
• Scaffold ID: ConS_8084CDRAFT_1000814
• Source Dataset Name: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3121
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Conch Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.5564135
  • Long. (^o): -110.8321631
  • Depth (m): 2194.56

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
ConS_8084CDRAFT_10008142	F038745	N/A	MDKAVMSICGELMQASLTFSAYYPLCLNSPSCAYAEAVERLIRRAASARDAEELIKVMDGRIKLEELGLPAPALKTLAEELGPEPRWLDALAASFFRLYLDMHRRRRVDGRDVAFALCLWAQKKRREDPWNPLWRAAELKPEKLYTAEEAREALKINEVLFRRLWRRALANEHAYGFQLILAALSLMATPTRSV*
ConS_8084CDRAFT_10008143	F051572	GAGG	MTSGKTHGGPFAEVRTLADIVLETGCKKSLQFLNTHFDLCVLAILIKSIPAGSMVRLRPEIVRRLVEEVAAAVGGGDRERIRNALLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLMKLEA*