Scaffold P_1C_Liq_1_UnCtyDRAFT_1037658

Overview

Basic Information

• Taxon OID: 3300000386
• Scaffold ID: P_1C_Liq_1_UnCtyDRAFT_1037658
• Source Dataset Name: Marine microbial community from Union City, CA, USA - Pond 1C Liquid 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 541
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Salt Pond → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.569083
  • Long. (^o): -122.103267
  • Depth (m): .67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012504	Metagenome	280	Y
F030992	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
P_1C_Liq_1_UnCtyDRAFT_10376581	F012504	N/A	SWLKKPYYYVNCSRVPMEQQKAYRSLQLKGTNSSSLAMDYVIFALYEKNFKLDVISGNVEKLD*
P_1C_Liq_1_UnCtyDRAFT_10376582	F030992	N/A	MNITLDLSKGQLSKLRNGHGIRINPTMFGSGVDLIIDPMTYHNMAKKLDKGKGVVIKMGSNEIDMNKMEGTGLFAGAGNKSGKISRIKKARKWRDFSDDTL