Scaffold PR_CR_10_Liq_1_inCRDRAFT_1001594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PR_CR_10_Liq_1_inCRDRAFT_1001594

Scaffold PR_CR_10_Liq_1_inCRDRAFT_1001594

Overview

Basic Information
Taxon OID	3300000385 Open in IMG/M
Scaffold ID	PR_CR_10_Liq_1_inCRDRAFT_1001594 Open in IMG/M
Source Dataset Name	Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	12514
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Cabo Rojo, Puerto Rico
Coordinates	Lat. (^o)	17.951083	Long. (^o)	-67.193167	Alt. (m)		Depth (m)	.05
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023480	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
PR_CR_10_Liq_1_inCRDRAFT_10015948	F023480	GAGG	MFEINNKLYSGVKDNKIVENFSHLDIIFDPSWQRIGVNLSGGADSALLTYFLCTIIDKHSLNTKIDVITYQRCWETRPWQGYISEQVYGWLKNKFPNIIENRRTTYIPPELEHGVIGPIINGRSGDQIIVGSFNKFAAWEYGLDAVFNATSKNPDATRADRMTNRDKDAVDGDVNDVWVYNKKSDGVMAHPFRFVKKDWIVAQYFIYGIEDLYHTTRSCEGDIQQHENVRNACGHFKDYTPGMEIPLCKQCWWCEERDWAESRLDSMLEEIKNG*

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