Scaffold P_1C_Liq_3_UnCtyDRAFT_1009330

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P_1C_Liq_3_UnCtyDRAFT_1009330

Scaffold P_1C_Liq_3_UnCtyDRAFT_1009330

Overview

Basic Information
Taxon OID	3300000371 Open in IMG/M
Scaffold ID	P_1C_Liq_3_UnCtyDRAFT_1009330 Open in IMG/M
Source Dataset Name	Marine microbial community from Union City, CA, USA - Pond 1C Liquid 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	754
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.5693	Long. (^o)	-122.102517	Alt. (m)		Depth (m)	.29
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015658	Metagenome	253	N
F048561	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
P_1C_Liq_3_UnCtyDRAFT_10093301	F048561	N/A	MENFYAKKDVKKYCNKTDNPNYDLHHFDTPFRSLVVAPSGSGKSNFITNLITLFCKGRGTYDNI
P_1C_Liq_3_UnCtyDRAFT_10093302	F015658	N/A	NEKIFDDVIVGTGYGVNNDPYISVGKYLIHKQHLLGGKLQVRSQVNHNQIHGFKSQNVTNNIRDVLLKLHKNEPIGFKDIDKLSEIEKNQLHTIGKKLHITDLFDIPSTLKSQEDKLKDEFILLRGSLLAGNNNPDLLRKFKIVLLKMKNNKLISLQEYNEVLNILLEMEI*

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