NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPhiseqgaiiFebDRAFT_101997256

Scaffold INPhiseqgaiiFebDRAFT_101997256


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_101997256 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1802
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023441Metagenome / Metatranscriptome210Y
F029170Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1019972561F023441N/ALKIAGKPPDDCGSYEELLALLRENQXXRKFPKALKIGPFVSFLNSKIPKNPEDIPDYGPIRGWVIDRIEMETKATRKALHFIRRDLAMLACLCVAPEKGSPRSWPKGALAVARKGGGFXXKLWDKPVDTPGLALALLYWHTWRERLDRPEQSRLHRKAWAYSDLLFPNSRGEALKKQAMHDALSRLGIQAEGSVRLTPELVRKAFLRREA*
INPhiseqgaiiFebDRAFT_1019972562F029170N/AMTDSKPQGVALEELIGAQALSADLKPALVACLTGRESRRWTVGELFERLNNLGVRCSKPAVLGALAELELEISLCPWLPWTLAEQGTEWSLAPKSDLFELLSGIRKLPGISSVTLTDEHKAVLLVVIGYRRKGGVSRTRISEILGLEAAPYLXXLXXNXLVYTAPGKELNWWRPTSEALLALGLRSGADIPELKALERYFDSQKSFQNDVEKQANLEPILEKAQTSQARRRRRELERRASVPRGLEPPSPDSE*
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