Basic Information | |
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Taxon OID | 3300000364 Open in IMG/M |
Scaffold ID | INPhiseqgaiiFebDRAFT_101919450 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5323 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013837 | Metagenome / Metatranscriptome | 268 | Y |
F040395 | Metagenome / Metatranscriptome | 162 | Y |
F043689 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
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INPhiseqgaiiFebDRAFT_10191945010 | F040395 | N/A | GAGAGIPPEMSNATSWTLAESFVLLFGYVLAFVVAVWFVAWVDRKLSSRRLFREIYRELGIGRYPPR* |
INPhiseqgaiiFebDRAFT_1019194506 | F013837 | GGAGG | MTTLMDPDRTEAPEGPRSKPAAAVDARRDTPTESRSLERSFEVASRGGYARTVVGRLAYFDEEAQTYMVLTRSGALVRVPLRDITSSRGVPRTGPIVADALSRMSRLRSATTVSPT* |
INPhiseqgaiiFebDRAFT_1019194507 | F043689 | AGGAG | MTTLXDXVRIEAPKRSPVRPASPLDPSWDDGSEIPSSERXXQDRSRNTQWDRLAMGRGQSLWREAA* |
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