Scaffold INPhiseqgaiiFebDRAFT_101802689

Overview

Basic Information

• Taxon OID: 3300000364
• Scaffold ID: INPhiseqgaiiFebDRAFT_101802689
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2791
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F007884	Metagenome / Metatranscriptome	343	Y

Sequences

Protein ID	Family	RBS	Sequence
INPhiseqgaiiFebDRAFT_1018026891	F007884	N/A	LSYRPYESKNGAREWFFGPVVTWLHSQDDRIAGVTQSGSGGDVLLAGITTYVGVRPGVHLWLGMDWDVAHSAGAMFMPLRRHISFGVTQQFRFHLK*
INPhiseqgaiiFebDRAFT_1018026892	F004042	AGGAGG	MNTRKIALLFLLGSVFVPVSQAQIKHIEMRVEGMT*
INPhiseqgaiiFebDRAFT_1018026893	F000092	GAG	VKQHLGRQSGVQKVDVNLIDGKVDVTPKEDGQIDLAQLLKAVYDSGVTVAEMDITARGKIVKDAAGNLSLQVPPNQSFAIAPNDVLKKVESFADSPAVVTLRGELYRKPAGKKKAAASGPLKLLILEVQKKE*