Scaffold INPhiseqgaiiFebDRAFT_101798608

Overview

Basic Information

• Taxon OID: 3300000364
• Scaffold ID: INPhiseqgaiiFebDRAFT_101798608
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4521
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060361	Metagenome / Metatranscriptome	133	Y
F064166	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
INPhiseqgaiiFebDRAFT_1017986084	F064166	AGGAG	VASIQMTVVTRSNRPPFTARGELEAFSFVPHAGIDFLCGACERVVLARVAPKFALEHSFPCPHCGALNEAP*
INPhiseqgaiiFebDRAFT_1017986085	F060361	GAG	MKDVRGLLRDLGREIERLARXNDLLERKLESITGALQGAVRVGGATPRSERLRRQRTRGRRGAPPKFNDAQAAQLRKDYERGATSVQLAKKYKAALPTILSTLRRAGTTLRRGRPSKK*