Scaffold INPhiseqgaiiFebDRAFT_101754055

Overview

Basic Information

• Taxon OID: 3300000364
• Scaffold ID: INPhiseqgaiiFebDRAFT_101754055
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1070
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F015375	Metagenome / Metatranscriptome	255	Y
F020884	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
INPhiseqgaiiFebDRAFT_1017540553	F020884	GAGG	MQIXNNWGELIGEINTTYTSAGEIITSNTMYDRGNPVFQTISVRDNQGQVRTTNVLRGKILP*
INPhiseqgaiiFebDRAFT_1017540554	F006757	AGG	MRNVAVLPPVKNELRAALLNLTVFKNLATHDLLAMAHALPGGTKVHIPDRITAIVLLLGTRSVGIRGESFLGARL*
INPhiseqgaiiFebDRAFT_1017540555	F015375	AGGAG	MQIGEPLRTVIVEPLEVPVKQPAREPEPVVAPQPGPEQVPVAQ*