Scaffold INPhiseqgaiiFebDRAFT_101605958

Overview

Basic Information

• Taxon OID: 3300000364
• Scaffold ID: INPhiseqgaiiFebDRAFT_101605958
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1673
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026077	Metagenome / Metatranscriptome	199	Y
F040296	Metagenome / Metatranscriptome	162	Y
F081613	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
INPhiseqgaiiFebDRAFT_1016059582	F026077	N/A	MTVDERSGRLRTRAASAARGASVVTQXXVXELVXAVGRLADSAVDRVVLSEMRVTSAAEGKRQLAGETDTEVLADKIQRVVVLATPIVRVMARGARFTRLPWAMIASSSVSIGLTVRTGVRELQVLASLVAYRLEQATGERADPRLVEKIAIDLYLNPXRXPDLSXNRLXLFRLTRKWXLLGAFGRKTSKRAAKALDAAEKLDAKELAERWGKR*
INPhiseqgaiiFebDRAFT_1016059583	F081613	AGGA	MARFRFMVIDEDGHRVGRFETADLNWRAGDGFALDEQPWRIVEILPEVSTMVTYNAVWVAAPAVDEEEQAALDGWPVPDAIRRARA*
INPhiseqgaiiFebDRAFT_1016059584	F040296	GAG	MIAGDEIVRVEEFKIGRFMALGLGRYEAIRAVEDGIDWHAVEALVETGCPLIAALEISH*