NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold INPhiseqgaiiFebDRAFT_100674503

Scaffold INPhiseqgaiiFebDRAFT_100674503


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_100674503 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1675
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071692Metagenome / Metatranscriptome122Y
F099524Metagenome103N

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1006745031F071692N/AWLLQKPTGPRLAKPLLVAGVVLFALGCASSAGLRPLSQTLPSGVPSAAQRATWERIDGDYETGTEHVRYSLFVDPERPLLFRITQYRVSLRRPMGSRPRFEDGAETVVWNEVPDSRVPLRCYAEERLDGKPSPGVPLSWRDVDPTTREFRVSMNRAMEIYARVRREGRGNPPVG*
INPhiseqgaiiFebDRAFT_1006745033F099524GGCGGMRSVRTVSRALSRAWALVALVAGLSCSRPPAPEGDAASLVHAAVLRYEAKQFLPEDGLPTCVAIHGSPDGMDARVREALHPTLPGLRSAEACAVVDGEVYLACSRVPAALLTSGPIRWIADDEAEVRGGFTRTRSSSLRPLYRVVRDGGRWVCLGPVVTGVPL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.