Scaffold SL_5KL_010_BRINEDRAFT_10009302

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SL_5KL_010_BRINEDRAFT_10009302

Scaffold SL_5KL_010_BRINEDRAFT_10009302

Overview

Basic Information
Taxon OID	3300000350 Open in IMG/M
Scaffold ID	SL_5KL_010_BRINEDRAFT_10009302 Open in IMG/M
Source Dataset Name	Alkaline brine water microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_BRINE
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	4083
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Brine Water → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location Name	Russia: Kulunda Steppe, Lake Bitter
Coordinates	Lat. (^o)	51.4	Long. (^o)	79.54	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026202	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_5KL_010_BRINEDRAFT_100093028	F026202	GAG	MKDTVSCNAMSKATVLSMGSLELLLRVSVFTELDLNEIGSTRLPREVLRASLNLTLLSCSFDF*

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