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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000348 Open in IMG/M |
| Scaffold ID | GreS_7680CDRAFT_1000885 Open in IMG/M |
| Source Dataset Name | Acidic sulfate chloride spring microbial streamer communities from Grendel Spring, Yellowstone National Park, USA - T=76-80 |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4648 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → Candidatus Nanoarchaeia → Nanoarchaeales → Nanopusillaceae → Candidatus Nanobsidianus → Candidatus Nanobsidianus stetteri | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Grendel Spring, Yellowstone National park. Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.7230812 | Long. (o) | -110.7095749 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F090626 | Metagenome / Metatranscriptome | 108 | Y |
| F097670 | Metagenome / Metatranscriptome | 104 | Y |
| F099549 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| GreS_7680CDRAFT_10008851 | F099549 | N/A | IVSLLTYSDISSDTKTFGDEELKYKLRAAIGYALALLASTLGYSMSAKVQQDVQIAKDSLKALFDRIVTDPELTYPELLDIYFALIQVVSIILNYGTPIPQPRTGNYDIA* |
| GreS_7680CDRAFT_100088511 | F090626 | N/A | MSRIFKFENIYFGKNSLVKLFANKTHIEDPIDYDAITLAFLLDVSDFTNTDALLSHFAIIDGNEIIPILVEWNLRTIHGRLLILLNQLPGPHDTKMLLKKFESEIKEDGRPEAVKYIAGQYARTLVDVKRLYQISSFLIQRIQQLKSIGIKKSEEEIRRLAEVYG* |
| GreS_7680CDRAFT_10008855 | F097670 | N/A | MTXYKVFDKDIYTETDEIVTINLKTGETNLEIKRYFYDGKELKEIKDFQEYNLKTNEISQKIQEEFAKFSSKYAKPPIGYMPISGIIYEFMLNRNNVVLIAYANIVKVENEISKEITNDSIKIIVKSKTIFNKEWNFESIQNLSPEIKDNIAKIIEKALKSAMVMMKKNT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |