Scaffold BeoS_FeMat_6568CDRAFT_1003521

Overview

Basic Information

• Taxon OID: 3300000346
• Scaffold ID: BeoS_FeMat_6568CDRAFT_1003521
• Source Dataset Name: Ferric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2638
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Beowulf Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.731451
  • Long. (^o): -110.7113131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042427	Metagenome / Metatranscriptome	158	Y
F087444	Metagenome / Metatranscriptome	110	Y
F092367	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
BeoS_FeMat_6568CDRAFT_10035212	F092367	GAG	MSENNAINVKQHFEKIDATVAKILRMLYRDLELGLEDDLMVALKLLLYLLNIIQRKATTKEEKEVVRQVKEKIIEYVMEGE*
BeoS_FeMat_6568CDRAFT_10035214	F087444	AGGTGG	MSEQDINPNSDSGAGTAKSLSVPQVPPVFSYETEGGNVLVYVVNAGFATFVFVSFDDNYSEYAYAIETLVPKPALVTKPTVSPTKVVYDLLEQAERAFYNPFIQNPFTKLLQDHEARTKLIVTLRKFLDASGE*
BeoS_FeMat_6568CDRAFT_10035217	F042427	AGG	MSLKENLGFSDSGGATSSSVPLPLTLPGCECPCHVGGEPYSCGAMCWHPWLDADKYVVELTSSTNNVDHYVQLFAIYSGGKLRYLVFDPSNESVQKFEVV*