Scaffold BeoS_FeMat_6568CDRAFT

Basic Information
Taxon OID	3300000346 Open in IMG/M
Scaffold ID	BeoS_FeMat_6568CDRAFT_1002525 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000346 Open in IMG/M

Scaffold ID

BeoS_FeMat_6568CDRAFT_1002525 Open in IMG/M

Source Dataset Name

Ferric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3528
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3528

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Beowulf Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.731451	Long. (^o)	-110.7113131	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Beowulf Spring, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.731451

Long. (^o)

-110.7113131

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F045200	Metagenome / Metatranscriptome	153	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
BeoS_FeMat_6568CDRAFT_10025253	F008949	AGGAGG	MSSQTVTLGTQIITPKVQDLGNTYYIEFQVKITKYLNNSTNQTIDVKFTCNKYRQVAVPRTDPLSPPTVQTVQKTIQECVEEWYNQHKSVYEVA*
BeoS_FeMat_6568CDRAFT_10025254	F011097	GGAGG	MIRDVPLYTSGGTDPFTGLTTGGSTITGNGSNYQVLSFHPNYARLHIYITSLSGTSPSIQFTVGSPVGANYYTLPPITSPQYVYVVGNENKTIITYLNTSNAVLQQVELPYNIFFNGAYVSWTVSGTSPSISAYIHFEFEDEEEGE*
BeoS_FeMat_6568CDRAFT_10025255	F045200	N/A	VAGHYPGGLSPTGAPEDRTYLVWFGSPAGTTNEKPLFSVFYARVHPERYVPNAPAETWLDPPVLLVSYDQISSDVVNWADNVFTSAGYTPSSPGVISVPGNTGYIPNYGYVGYPNSPSPITFNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNNEPYFLGGLKFDSTVEQTIVKALLSIAWGNTMQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNSLYMTAMSGINYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITAYGQAFIAFNGLPENLGSCPSSYGSNTYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGTYVIPITLPPRPDWGGISSIRMKVLYIAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYLDGIAVYLDKTVMSPKGKTLVTVPSFIFGQTSSGGSYYVIAGANGANAIYHGVVAHTFGKKYARVYFNINAGNPAFVNIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPVVERNFGTLVYAADYAYNMPYALEYSRTSKFIVDGQVLWVLTNGSLGPVWVELEGD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold BeoS_FeMat_6568CDRAFT_1002525

Overview

Ecosystem & Geography

Associated Families

Sequences