NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BeoS_FeMat_6568CDRAFT_1000608

Scaffold BeoS_FeMat_6568CDRAFT_1000608


Overview

Basic Information
Taxon OID3300000346 Open in IMG/M
Scaffold IDBeoS_FeMat_6568CDRAFT_1000608 Open in IMG/M
Source Dataset NameFerric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)10931
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameBeowulf Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.731451Long. (o)-110.7113131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018029Metagenome / Metatranscriptome237Y
F075083Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
BeoS_FeMat_6568CDRAFT_100060823F075083GAGGMNLEEIDLTEMPETESQKQKLIDSLRELDIDFEKGEDSVRIKGLAGFVCCGNIVVYQIPDRKIVFEELGDANRIILNSTDETKPGIKQILLDKSVYARYDFPYLIIQF*
BeoS_FeMat_6568CDRAFT_10006086F018029AGGMKYLWQVVMKKLQKDELNEKEMRDLIDYLNVLKEELKKLRIILYSPFGYIVDFNVVFKDPWYCSEVHLRLLNGEHGLLYLDSFIWRIFTNQIEVKPFISEVTHP*
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