Scaffold BeoS_FeMat_6568CDRAFT_1000266

Overview

Basic Information

• Taxon OID: 3300000346
• Scaffold ID: BeoS_FeMat_6568CDRAFT_1000266
• Source Dataset Name: Ferric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 18352
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Beowulf Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.731451
  • Long. (^o): -110.7113131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035135	Metagenome / Metatranscriptome	173	Y
F071411	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
BeoS_FeMat_6568CDRAFT_100026615	F071411	N/A	MSEDDDKMLDIMINSADIRTELEEHMDYIAKLLKDNLQDVIDNAIDVQLYINLPDKEPVGFDIGIVFGGPNIRLVYSRGACQLRGSWGSLTDEKDIDNEICETILDYLTQTLSSRGEK*
BeoS_FeMat_6568CDRAFT_100026625	F035135	N/A	MTYVNEEFTTPLRQKRKIHIIPHSVKYGQQFITSFFFDAIDDEYQYIIFTFLMKNAFKIYLNIWREQRKFISYLKTFKNEFKNAFDYYQLLLITTKERIYQTTHAIACFFDFENDIHEILTIYVNELFCNYVDDASRR*