NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OneHSP_7476CDRAFT_1004424

Scaffold OneHSP_7476CDRAFT_1004424


Overview

Basic Information
Taxon OID3300000342 Open in IMG/M
Scaffold IDOneHSP_7476CDRAFT_1004424 Open in IMG/M
Source Dataset NameFerrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA - T=74-76
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2283
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameOne Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7330426Long. (o)-110.7089928Alt. (m)Depth (m)2286
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
OneHSP_7476CDRAFT_10044243F080245N/AVIFVWSARVIIPGFRDEVFVSPALINMYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT*
OneHSP_7476CDRAFT_10044245F081547GGTGGMPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEIMSQGNEVKPA*
OneHSP_7476CDRAFT_10044246F076263GGAMLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE*
OneHSP_7476CDRAFT_10044247F080247N/AMIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKEKDIYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT*
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