Scaffold OneHSP_6670CDRAFT_1002816

Overview

Basic Information

• Taxon OID: 3300000341
• Scaffold ID: OneHSP_6670CDRAFT_1002816
• Source Dataset Name: Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2981
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7330426
  • Long. (^o): -110.7089928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
OneHSP_6670CDRAFT_10028161	F061983	N/A	KVKVVQIKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFNCYYGDVIDVEKLKDVGAIVVKESDGEPLRTMKTLVAKWYNKKLVEEEKAYEVCNTFVT*
OneHSP_6670CDRAFT_10028162	F080247	N/A	MIIWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKEKDIYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT*
OneHSP_6670CDRAFT_10028163	F076263	GGA	MLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRXGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE*
OneHSP_6670CDRAFT_10028164	F081547	GGTGG	MPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEMLSQGNEVKPA*
OneHSP_6670CDRAFT_10028165	F087442	GAGG	MMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESCMVTKL*
OneHSP_6670CDRAFT_10028166	F080245	AGGA	LHGDKTVIFVWSARVIIPGFRDEVFVSPALINMYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT*
OneHSP_6670CDRAFT_10028167	F075084	GAG	VRPCRKDLCLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYTQYNGVPCDLVSVFTVETTYADILHMIVNYNSENVSKVLTKMTEMCSTYEVR*