Scaffold EchG_transB_7880CDRAFT_1001388

Overview

Basic Information

• Taxon OID: 3300000340
• Scaffold ID: EchG_transB_7880CDRAFT_1001388
• Source Dataset Name: Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5603
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Echinus Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7220558
  • Long. (^o): -110.7021057

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
EchG_transB_7880CDRAFT_100138810	F081547	GGTGG	MPYLRGVFINFGEETYYLSCGIVNGGNLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEILSQGNEVKPA*
EchG_transB_7880CDRAFT_100138811	F076263	GGA	MLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTMRVSSREQLYRRLFPEYSPEYSGNYTEEFWGGE*
EchG_transB_7880CDRAFT_100138812	F080247	N/A	MIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKEKDIYANVSLTDPDTIKEFMTMSTYYRKYGVSIPNVLDKIMYRKVPT*
EchG_transB_7880CDRAFT_10013887	F075084	GAG	VRPCRKDLCLLYSLGADYAKLIDFTRENPAGRLFEVGARAMSYASGLMRLWYGYDTGALLERSLRRILRRSITYCNIMRRLGLESEYCRRFTIYNGVTCDLVSVFTVETAYADILHMIVNYNSENVSKVLTKMTEMCSTYEVR*
EchG_transB_7880CDRAFT_10013888	F080245	N/A	MIFVWSARVIIPAFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT*
EchG_transB_7880CDRAFT_10013889	F087442	GAGG	MMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTIMFKWYDKIAVIIVGEEGTKVNLLDIVDVRFLVERNENCLATRL*