Scaffold SI39nov09_100mDRAFT_1011655

Overview

Basic Information

• Taxon OID: 3300000325
• Scaffold ID: SI39nov09_100mDRAFT_1011655
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2261
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 39, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.29
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079935	Metagenome	115	Y
F087027	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
SI39nov09_100mDRAFT_10116555	F087027	AGGAG	MDLKELIDNNIAVLDAELDNKETLAEQKLERQRKALKELYNEIQPVIKEAGYNIALFKTAKHHTKKHRSYDDGSRYSEEIVWLLKIEFEYSECLKHTGETESYYAPTTRYAGQHCGGNDPAYIKISWGDNRGVYYMVPNVAYDYNKERNDVDKRTYLELDGTKDMIIERLAVVLANVIRLEKKGNHNE*
SI39nov09_100mDRAFT_10116559	F079935	AGGAG	MSVADISNIMTPEQIDAITHAWLDLCAIKEHFDAPDEFVGIGADELKAACEGSIEELEQEFPFLLEGVEDE*