Scaffold LPaug09P202000mDRAFT_1024287

Overview

Basic Information

• Taxon OID: 3300000323
• Scaffold ID: LPaug09P202000mDRAFT_1024287
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 930
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P20, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.566667
  • Long. (^o): -138.666667
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008625	Metagenome / Metatranscriptome	330	Y
F039182	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P202000mDRAFT_10242871	F008625	N/A	FLPHVDDNTPREELDIVKKHIQEENQLMTLNPLGHKPIKDIDEIHQRNRRKTDDPYIRLTMKNKDYKRWKNNTAERR*
LPaug09P202000mDRAFT_10242873	F039182	GAGG	MIKWIFIIAIALSLNGCADTADAEDSTATTPAEQQQEADKEVSDDETWIAVVMTWNPVKRVIDKEFASEVECWNFYEGGTGESRFGEQHRDHQGNLPTKDSHFGPDYLEYPIRTYRGINDEQGSVWLTCDIKSRYEDL*