Scaffold LPaug09P202000mDRAFT_1014520

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPaug09P202000mDRAFT_1014520

Scaffold LPaug09P202000mDRAFT_1014520

Overview

Basic Information
Taxon OID	3300000323 Open in IMG/M
Scaffold ID	LPaug09P202000mDRAFT_1014520 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1365
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P20, Pacific Ocean
Coordinates	Lat. (^o)	49.566667	Long. (^o)	-138.666667	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F094004	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P202000mDRAFT_10145201	F094004	N/A	MKRFKQYLKEGVAWELSASKMIFDFGQMSNMKIPXTSKTMEWIFQVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMSADYIDSGIKTEGGVVAELDANIIMSSKDDILSMPDKTGRRWVELHSIDPKEKMHPEFEKMLIDLAIKHDPRNKEYLKTSPEIGMGVWWKLQSDLQTNFAKDKAGKKLSLIIADYIDGINVILKKHKKEIQGRI
LPaug09P202000mDRAFT_10145204	F000245	N/A	TFKEYRLDKKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMAGKKGMMAFNYQLEDK*

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