Scaffold LPaug08P121000mDRAFT_1013476

Overview

Basic Information

• Taxon OID: 3300000322
• Scaffold ID: LPaug08P121000mDRAFT_1013476
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P12 1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P12, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.97
  • Long. (^o): -130.666667
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026401	Metagenome	198	N
F051205	Metagenome / Metatranscriptome	144	Y
F081748	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P121000mDRAFT_10134761	F081748	N/A	DCINASCMRFNVGEHSYIIDNWIEAIRTKFTIEDYFDPSINRNKKIYHDLNSFPPAVYRGDQEWTTRQLKEQNVDIIYYPSDWLQSYKVGYDMNSKIVVFHGRPNPHEVEDTWVKENWK*
LPaug08P121000mDRAFT_10134762	F051205	AGTAG	MGKGELEVNRLLLVFIIIATWMVVSCETSTRGCYGHWVKGPGHHRGTRHMLKDAHLPYYQCVDENNKGNNLKERKYL*
LPaug08P121000mDRAFT_10134763	F026401	GGA	MIKVESILKWKVEGSLLKKLKMVRAQILSKNSDAVAISDNDLHITLAAGAGWQKLRSRIKANDIDEPEFSIDIDPTVKVMEKGGSKSWYVKLKNQQDWKEYVMDSLQGTFDSGRVYHISIANLTGNKMDSVPMVEDRDYKNEYKKFQSSKKMKKYRAELNQYNRRKGTYGNGDKKDASHRNGK