Scaffold WSSedB1CaDRAFT_10002008

Overview

Basic Information

• Taxon OID: 3300000313
• Scaffold ID: WSSedB1CaDRAFT_10002008
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Cattail
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7317
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella → Niastella koreensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location

• Location Name: Twitchell Island in the Sacramento/San Joaquin Delta, CA
• Coordinates
  • Lat. (^o): 38.10726
  • Long. (^o): -121.648538
  • Depth (m): 1.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050588	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
WSSedB1CaDRAFT_100020086	F050588	N/A	METVIDLLKAIQLNLLEVVVAGLFIFSFGYLIGMKKVKKLTHEIYGLQRDVLELNEELLYGAHEGVSETPVIGLKPGSLKQTKIAK*