Scaffold bgg_mtDRAFT_1052166

Overview

Basic Information

• Taxon OID: 3300000305
• Scaffold ID: bgg_mtDRAFT_1052166
• Source Dataset Name: Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - Combined Assembly
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 633
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Blue Grama Grass Rhizosphere Eukaryotic And Microbial Communities From Sevilleta Long Term Ecological Research Site, New Mexico, Us

Source Dataset Sampling Location

• Location Name: Sevilleta Long Term Ecological Research site, New Mexico, US
• Coordinates
  • Lat. (^o): 34.3348
  • Long. (^o): -106.631

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003339	Metagenome / Metatranscriptome	493	Y

Sequences

Protein ID	Family	RBS	Sequence
bgg_mtDRAFT_10521661	F003339	N/A	DTKVYWYNPTTRTSERVQAPSTDEQAIQMLSGTPDSADFIGKYCELRRSGSPVEQALVLVGHEFRLRGPEYQLLLR*