NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold bgg_mtDRAFT_1045815

Scaffold bgg_mtDRAFT_1045815


Overview

Basic Information
Taxon OID3300000305 Open in IMG/M
Scaffold IDbgg_mtDRAFT_1045815 Open in IMG/M
Source Dataset NameBlue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - Combined Assembly
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)518
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Blue Grama Grass Rhizosphere Eukaryotic And Microbial Communities From Sevilleta Long Term Ecological Research Site, New Mexico, Us

Source Dataset Sampling Location
Location NameSevilleta Long Term Ecological Research site, New Mexico, US
CoordinatesLat. (o)34.3348Long. (o)-106.631Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009290Metagenome / Metatranscriptome320Y

Sequences

Protein IDFamilyRBSSequence
bgg_mtDRAFT_10458151F009290N/AGGTRVITTNTEKIGRIAREMAEVQRDSYEALAENFAAAQSRSIGLANDGLKFMRLQEDNARAAQEWFANGVKLLQLQQRNAEFVQGWTGDAVEVVREQSEHNVRTAEAFARSVSKQQEGYRALTQQWVGAYRDFFSPFSYVQKSMRTFQRATQQGLEATQQVTQQGLRVAEE

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