Basic Information | |
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Taxon OID | 3300000305 Open in IMG/M |
Scaffold ID | bgg_mtDRAFT_1038342 Open in IMG/M |
Source Dataset Name | Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - Combined Assembly |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 567 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Blue Grama Grass Rhizosphere Eukaryotic And Microbial Communities From Sevilleta Long Term Ecological Research Site, New Mexico, Us |
Source Dataset Sampling Location | ||||||||
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Location Name | Sevilleta Long Term Ecological Research site, New Mexico, US | |||||||
Coordinates | Lat. (o) | 34.3348 | Long. (o) | -106.631 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F053716 | Metagenome / Metatranscriptome | 140 | Y |
Protein ID | Family | RBS | Sequence |
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bgg_mtDRAFT_10383421 | F053716 | N/A | GGMPDQEGNVKGPGVTDTPDQAYKSGRAEDIQEGSLGADTGGGDAQVSRLTKDADAGDEGGSAHVGGFAGQDADDSPDAGTVGDISGEGDPSPHAQYDTLKKDEAAGQDEGEGGLSVGEGAKDLAPGELGDHGADELGQRGYGQQPDYDANDPDARQQHPKTPSDMGNR* |
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