Scaffold EM308_1000982

Overview

Basic Information

• Taxon OID: 3300000293
• Scaffold ID: EM308_1000982
• Source Dataset Name: Human fecal microbial communities from Cork, Ireland - EM308
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83616
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (41.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Sampling Location

• Location Name: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F064725	Metagenome	128	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F083451	Metagenome	113	N
F098313	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
EM308_100098213	F077313	N/A	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTSEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVFLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDESTRRLNASVLSKAINDSNDIVNGLEGRFTDFANVIYKEQEDRKIKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARTRALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGSMDIGDVEGPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEMFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAILSSNIGKYINEVEQGNVAQRTWADMYDKNIVQPQAYQQRILHGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
EM308_100098216	F050794	GGA	MQDLRVQRVKVLMMLYTSHYFVNNRQRQLFDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEYNGIIKKLMKEAEKLELDTDAIKEMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVEMIETRYNRFVW*
EM308_10009823	F064725	AGAAG	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKMV*
EM308_100098233	F098313	AGG	MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTN*
EM308_100098261	F076653	AGG	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
EM308_100098271	F083451	GAG	MNVNLINKINNFSNVDKNEREKQVLDLLMSRKDIKKLVEKSNECYSRMDFVGAMRYRQEIKSILDRESKIMLTKSESLVDLMNDADNEYKFNMLVWLHSMMCMADVFNGMLEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGASKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*
EM308_100098291	F078005	N/A	MKKSKFVKELERIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMNLMVEANTMASMNDRTFACLMSEVYKQKFTKAITISEDEDDEDN*