Scaffold HuiMet_102864

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold HuiMet_102864

Scaffold HuiMet_102864

Overview

Basic Information
Taxon OID	3300000270 Open in IMG/M
Scaffold ID	HuiMet_102864 Open in IMG/M
Source Dataset Name	Marine microbial mat from the Comau fjord, Huinay, Chile. Sample sequenced in March 2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	OMICS Solution
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1814
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Microbialites → Marine → Marine Microbial Communities From The Comau Fjord, Huinay, Region De Los Lagos, Chile

Source Dataset Sampling Location
Location Name	Chile: Los Lagos Region
Coordinates	Lat. (^o)	-42.021639	Long. (^o)	-72.689161	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067737	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
HuiMet_1028642	F067737	N/A	MENTNLKLALREVGKLIRGNLKEGAKNDGFKASGKLDKSFKYRVEDNELYIFGEEYANALSKGIDKKGRYSKEMSSNLVKWAKIKGLRPQFRDKKGRFTKVTDRTWKSLGFVLARSIAGKSNARNPKNPKGGISERFGYKGSGFIKAVQEQTRTQIKNIITEAYKKDIEEQLNSITALK*

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