NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M3P_10209825

Scaffold M3P_10209825


Overview

Basic Information
Taxon OID3300000268 Open in IMG/M
Scaffold IDM3P_10209825 Open in IMG/M
Source Dataset NameLotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)570
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Source Dataset Sampling Location
Location NameUSA: Solway, Minnesota
CoordinatesLat. (o)47.349634Long. (o)-95.182806Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007517Metagenome349Y
F068592Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
M3P_102098252F007517GGGGGMMDKLLESLNKKLDEHVKQLVEVVSGGGAKSHDHYKELCGNIRGLQTAQYEIADLVRRTKEYEDD*
M3P_102098253F068592GAGMTDFDVSAVDLSGVLNTSAEEKAKQVPDPATYHLLCMLPKAEDEYSETGILKSATAILHEELLSPVLFVAKIGPDAF

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