Scaffold M3P_10048440

Overview

Basic Information

• Taxon OID: 3300000268
• Scaffold ID: M3P_10048440
• Source Dataset Name: Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1441
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Source Dataset Sampling Location

• Location Name: USA: Solway, Minnesota
• Coordinates
  • Lat. (^o): 47.349634
  • Long. (^o): -95.182806
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F024112	Metagenome	207	Y
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
M3P_100484401	F024112	AGGA	MKIEDYDKERATVLNALYCSVRSAIQAEDLHNNHRIEWIEDDFKVAQKKLEAIEAEMRVLLGDPFAEEVK*
M3P_100484402	F057375	AGG	MEQTVHFVNASDFFNAIELGSAESGEFLDQFTYGDALTDITLVARTTFLQRLTKFIEECEDIYEKDVVMQSLKEFTFGLMGAIKHVNIEA*
M3P_100484403	F003750	GAGG	MTLDMVNRLMYLVVWGGGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMFVGCLAGVGLLCGIWMVMVQSSRELQGKKQYQYVVL*