Scaffold M3P_10044194

Overview

Basic Information

• Taxon OID: 3300000268
• Scaffold ID: M3P_10044194
• Source Dataset Name: Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1523
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Source Dataset Sampling Location

• Location Name: USA: Solway, Minnesota
• Coordinates
  • Lat. (^o): 47.349634
  • Long. (^o): -95.182806
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F078705	Metagenome	116	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
M3P_100441941	F078705	N/A	VDAIAIEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYVSGNFNLITIEKLRKYVKSKRDMVK*
M3P_100441942	F103253	N/A	MEEKVWIYLSKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNILTGFAKNVDIPENLKLAIFKNYTFDEEETENAN*
M3P_100441943	F001561	N/A	MKRKQKMQTSEQKIKLLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKNGDKIRAIGNCRFNLTRFPNDPYAQSKLKELTK*