Scaffold M3P_10033301

Overview

Basic Information

• Taxon OID: 3300000268
• Scaffold ID: M3P_10033301
• Source Dataset Name: Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1796
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Source Dataset Sampling Location

• Location Name: USA: Solway, Minnesota
• Coordinates
  • Lat. (^o): 47.349634
  • Long. (^o): -95.182806
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006182	Metagenome	379	Y
F016812	Metagenome	244	Y
F034183	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
M3P_100333012	F006182	AGAAG	MIKYISRPIMKINFKVSGVMEIPDDAIKHYDVAGKLYALEFNDIMYMLQVCIVAEQGAGGFDILHQYEDMENHSITNLRYDDAEFCEC*
M3P_100333014	F016812	AGGA	MNTLYPELINEEDEAMFSSNLFKLYKLDERCGKLEAPSFRVLYLKDKKIQVHISNHFNSPTCIISYYNIIDKSCIDARTISKKLYNKIHDHYFEVKKKIF*
M3P_100333015	F034183	N/A	AEEINDEEAALLFQLMLSAFETANLQKIQYQNEDLPDESSLMVNVELDTKNVPAAVIEKLLGLLK*