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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000268 Open in IMG/M |
| Scaffold ID | M3P_10013126 Open in IMG/M |
| Source Dataset Name | Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Minnesota |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3011 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Solway, Minnesota | |||||||
| Coordinates | Lat. (o) | 47.349634 | Long. (o) | -95.182806 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004583 | Metagenome / Metatranscriptome | 432 | Y |
| F006220 | Metagenome | 378 | Y |
| F010398 | Metagenome | 304 | Y |
| F013084 | Metagenome | 274 | Y |
| F048994 | Metagenome | 147 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| M3P_1001312610 | F004583 | AGGAG | MKSTRNSDRLRDILLSTRHQIVALKDIQIDLMRYDAKVANQVATQISALEEVYKHQLSLVTLAENVEPKRNGWFSGQFKTKEDRLANIMD* |
| M3P_100131262 | F010398 | AGGAG | MEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWNELNPHLIQAVVDSESDIDYTEIHCESSVYADTLTIDDSKHMTTVYYDKNRKTDSFEIM* |
| M3P_100131266 | F013084 | N/A | MGILSILGLMEETKNIVLHRGHNVKNWLVLGNDCYALECADCKMTCMIKEKPLPNEIKASGEALAVNCVKPVKEKKLRKK* |
| M3P_100131268 | F006220 | GAGG | MKKFKKFIEELAIASGTEMMRASQMRTTSFKDKSKYSRKQKHKNRQDKNSGDSF* |
| M3P_100131269 | F048994 | N/A | MIGTVMIEFGAMNLYVNGVCVATTSTMAGIKHAAKRYNLQGYIMATG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |