Scaffold LP_A_09_P04_10DRAFT_1002600

Overview

Basic Information

• Taxon OID: 3300000265
• Scaffold ID: LP_A_09_P04_10DRAFT_1002600
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5178
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, Station P4
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F024348	Metagenome / Metatranscriptome	206	Y
F029762	Metagenome / Metatranscriptome	187	Y
F056899	Metagenome / Metatranscriptome	137	N
F063073	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P04_10DRAFT_100260015	F005132	N/A	MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYEDLEAKVLAETLDVAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCNNDLFDEQDNYQGDVFYPQDGITNQTCEDGGVSYNL*
LP_A_09_P04_10DRAFT_100260016	F029762	N/A	VSWVKKEEDAPTFKPLDVANLDKTIDVLSKLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREILLDSVNRIFATIGYDGMDLGIVEQQINLESIKGANTEDV
LP_A_09_P04_10DRAFT_10026002	F063073	N/A	MNLTAEEKNNTPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLSINDVIFKVDISDYTGIEGGFGYIFFNPSSGRLLIEKDNVKKVYKVEVDLLDESVY*
LP_A_09_P04_10DRAFT_10026004	F056899	N/A	MSKNTFVRASISGDYGQDLVMKYLKDKGYEVEEAPKKLFYDWDVKGIKNGRTVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRNADSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLQMANYKVVGNSATGDDNAQGWIPPLHELLVSRYGYKATIDLTEYA*
LP_A_09_P04_10DRAFT_10026007	F013231	N/A	MINQRNYQTCKLIKNRVDLYLYEMAILFANLGTDSTQEEVAEAYKREAEYIELIAELDPEKGDRLRSSY*
LP_A_09_P04_10DRAFT_10026008	F024348	N/A	MLFEEYYEDLTDGEANLILDIYRVIDLLVYNHEPVTLVRLGHELGIKTQELSDYLPIIITILNKVEDQYAEVRQVAD*
LP_A_09_P04_10DRAFT_10026009	F008384	AGTAG	MPRYDKSLIEREAIISVQQGSLTNELGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYEKGKSAANLIISIIYSTMTNKIVSLNHSDVYGHNIKGYLTYIEDGEAVTXLKRYIKDDYLSEKL*