Basic Information | |
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Taxon OID | 3300000265 Open in IMG/M |
Scaffold ID | LP_A_09_P04_10DRAFT_1001501 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7311 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (52.17%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Line P, Station P4 | |||||||
Coordinates | Lat. (o) | 48.65 | Long. (o) | -126.666667 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018014 | Metagenome / Metatranscriptome | 237 | Y |
F025996 | Metagenome | 199 | Y |
F039094 | Metagenome / Metatranscriptome | 164 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
LP_A_09_P04_10DRAFT_100150110 | F039094 | GAG | MTHEKQVALNVQEIGVLLSALQLLDYADEHRIAKAYGSAPSLHDRLKTIYDGMDTSICETKDDQICEPSF* |
LP_A_09_P04_10DRAFT_100150112 | F025996 | GGAGG | LKIFTSQRDMHIGELDKSIIELSKRKLKLLQEVTEINESISFLRQQQEDLCNVHE* |
LP_A_09_P04_10DRAFT_100150120 | F018014 | N/A | MIVNLTKNEIKHLVYLMGKGDDDHPELNQNLLNKLEPLIEVCTCKEKDSETEQ* |
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