Scaffold LP_A_09_P04_10DRAFT_1001357

Overview

Basic Information

• Taxon OID: 3300000265
• Scaffold ID: LP_A_09_P04_10DRAFT_1001357
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7721
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, Station P4
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P04_10DRAFT_10013577	F020020	AGG	MKKYIVEFTHSSGEIEKVELTTDRLEWSIQQWKRNRSIVKHEIINEDTNNSKQMLFG*
LP_A_09_P04_10DRAFT_10013578	F001222	N/A	MKVLEKFIRQTLSEAAKINFAGHSFVLKVDTNEDPQKKGVKIQFLPTEFGEITPTEQNDIAIELETRLEKGLAEFDMRVERDRNLKDKTIIGFFIYIEYFDRIIRKALSGQNPKSDGNSNPEV*
LP_A_09_P04_10DRAFT_10013579	F003188	AGAAG	MTDPKKRIRQTLFSIHPLSYRIKVKEPDKESMDKKLFIQVIKQMRTIEERRDFMQEEIGMDMTTYEDQFFAVIENLMKMHFNKEQLALIQMYLYQLVPDKEWDGTITIEKDKKESIVPFKTPVDVWDVVNSFTK*