NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LP_A_09_P04_1300DRAFT_1050090

Scaffold LP_A_09_P04_1300DRAFT_1050090


Overview

Basic Information
Taxon OID3300000262 Open in IMG/M
Scaffold IDLP_A_09_P04_1300DRAFT_1050090 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1300
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameLine P, Station P4
CoordinatesLat. (o)48.65Long. (o)-126.666667Alt. (m)Depth (m)1300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083802Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
LP_A_09_P04_1300DRAFT_10500902F083802N/ALKHKESRFNTLFPKRLEKVYSTIRSLSKLSNRNNYFYDSSNIFMALSSIVFELRELAASYGLDSSDIKIDIYSLSDQQKKPTLKTDDIRNNDAKDIASELLEIIEKKIKTEEKLHSEINTLKRELSFLRDKVENQQWSSTRNFT*

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