Scaffold LP_A_09_P20_500DRAFT_1000059

Overview

Basic Information

• Taxon OID: 3300000260
• Scaffold ID: LP_A_09_P20_500DRAFT_1000059
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P20_500
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20240
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, Station P20, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.566667
  • Long. (^o): -138.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071749	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P20_500DRAFT_10000591	F071749	GAG	MIFVPLDIPPVPNKQLILKNFVAEDTFAWWKEETLLGVKDLSKPFGEPKQWTEVAKEKYSDLIKWIDEYFPFEYKFYVRLARSTGNVAPHVDGNYTKAPHPHHMTITQEMFDHQRANEPIGYRFVVSGSRDTLYMCNEYDYSKDMSNQKKVYCTIPNDTDAFLINNCTQPHGVDVKEGVDDDRIVGFVLGKVNVKQHQEL