Scaffold LP_J_09_P20_1000DRAFT_1020558

Overview

Basic Information

• Taxon OID: 3300000258
• Scaffold ID: LP_J_09_P20_1000DRAFT_1020558
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_09_P20_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 808
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F044553	Metagenome / Metatranscriptome	154	N
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
LP_J_09_P20_1000DRAFT_10205581	F061282	N/A	TAMGGGNLAVRGIPLLKKPPKGLVMKRFGGIDVFAIDPTHFQKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSSTGCMQYLKHGS*
LP_J_09_P20_1000DRAFT_10205582	F001334	N/A	MMKFKEYLQLNADDSIEQVMDGEWILKSRSSWKATDDEDNKLEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIYPQPSN*
LP_J_09_P20_1000DRAFT_10205583	F044553	GAGG	MPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQDLHKTSDNEVRDELKILHTRIGDLHDKC