Scaffold LP_F_10_SI03_120DRAFT_1016186

Overview

Basic Information

• Taxon OID: 3300000256
• Scaffold ID: LP_F_10_SI03_120DRAFT_1016186
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - ample_F_10_SI03_120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1876
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F019113	Metagenome	231	Y
F042854	Metagenome	157	Y
F062279	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_120DRAFT_10161862	F062279	GAG	MYDRMKAFLYHCTNVVLAMVLVGACGAYVIINSMIMTRVINDLRLDTYVNFDTGMGIVMLILLLGWGPVWISRSLNDRSHYVGRL*
LP_F_10_SI03_120DRAFT_10161864	F013357	GAGG	MTRARYIPGALVEARNSKYGKGFGIILTGPTLDTKAATRYRDLPNEQAWFKVHWFEKPGSVNAYYMQRNNGQVDMSKNQIKLVRR*
LP_F_10_SI03_120DRAFT_10161866	F042854	N/A	MRELRGDPIPQWAHDPFVEVYTARRIREMRLEHQTEQRKIDLDNRKLGSYTVSTMGDHDGES*
LP_F_10_SI03_120DRAFT_10161867	F019113	N/A	MVEWKDTNFKVGDLVRDNLNQGAGNYGLGVIVKIDVATLLGEKWARSDPPADHDIPGKRYAVYFNKFERTITFHGDYLEKV*