Scaffold LP_F_10_SI03_120DRAFT_1000797

Overview

Basic Information

• Taxon OID: 3300000256
• Scaffold ID: LP_F_10_SI03_120DRAFT_1000797
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - ample_F_10_SI03_120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14571
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F047713	Metagenome	149	N
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_120DRAFT_100079712	F092887	AGGGGG	VVISKPIRRNKNTPKNVVLIEPPRKVSTHDRIINVLKEYKKGLPLTELYYKTKVLSMGNLHHTIKFMVRAGEVKQESCPHCSVTTLYKLTI*
LP_F_10_SI03_120DRAFT_100079718	F047713	AGGAG	MEIIGQGEVAALEIIKEMFGNSSEYMTQVKLSDMVSPEYLETFSDRQLKETIDIVVVTVFECLAIRVQDKHHTSPRMAMIDNIQKLMLEWNGWKVIDIWHYECKELWKDKVNKKSRLELELALKESSID*
LP_F_10_SI03_120DRAFT_10007975	F007003	N/A	MINFFTENIDEKKYRDIIQRIIMINGHDGTNNSGYKAWQNFEENWELNIIPVTEQEDFKVYYEHLNVETSDGIAWGVTGSKVIYMFINDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRIYDSPEGRANTRGAAATVIVHDNWYGNKKTIKIWIRWSMIWLPITIPFIPVKEAKKIYAI*